Bioinformatics researcher and software developer specialising in microbial genomics. I build widely used open-source tools, publish peer-reviewed research, and co-host the MicroBinfie podcast. My work is recognised across the bacterial genomics community for its focus on practical, open science.
What's on this site
- Research notes – My technical guides and essays on bioinformatics and microbial genomics, including popular posts on Salmonella serotyping and phylogenetic visualization with R (ggtree)
- MicroBinfie podcast – A searchable catalogue of past episodes. The podcast explores the fast-evolving field of microbial bioinformatics — where computer science meets microbiology — sharing insights, tips, and trends for both newcomers and experts.
- Publications – My peer-reviewed research papers. Searchable, with full PDfs
- Software – Free and open-source tools for genomic analysis I have co-developed
Today's picks
Research Note
A bioinformatician's guide to serovars and antigenic formulae in Salmonella
31 October 2022
MicroBinfie Podcast
Episode 83: A short journey into mobile genetic elements
26 May 2022
Publication
The EnteroBase User's Guide, with Case Studies on \emphSalmonella Transmissions, \emphYersinia\emph Pestis Phylogeny, and \emphEscherichia Core Genomic Diversity
Genome Research (2020)